The exit status of the task that caused the workflow execution to fail was: 4.
The full error message was:
Error executing process > 'export_mona (1)' Caused by: Process `export_mona (1)` terminated with an error exit status (4) Command executed: wget -qO- "https://mona.fiehnlab.ucdavis.edu/rest/downloads/retrieve/4ebf9d78-f0d4-470c-b8cb-afc5f6241584" | funzip > "MONA_ML_Export.msp" mkdir -p "./temp/" python3 /app/pipelines/gnps_ml_processing_workflow/GNPS_ML_Processing/bin/MSP_ingest.py --msp_path "MONA_ML_Export.msp" --summary_output_path "./temp/MONA-Export.csv" --spectra_output_path "./temp/MONA-Export.mgf" Command exit status: 4 Command output: (empty) Command error: funzip error: invalid compressed data--length error Work dir: /data/gscratch/web-services/Cleaning_Pipelines/work/f1/0cfcfc97429f4b532060857178263e Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`
nextflow run /app/pipelines/gnps_ml_processing_workflow/GNPS_ML_Processing/nf_workflow.nf --GNPS_json_path /output/ALL_GNPS_NO_PROPOGATED.json --output_dir /output/cleaned_data/ --conda_path /app/pipelines/conda_envs/gnps2_ml_processing_env --matchms_conda_path /app/pipelines/conda_envs/matchms_env --api_cache /output/structure_classification/ -with-report /output/cleaned_data/ml_pipeline_report.html -with-timeline /output/cleaned_data/ml_pipeline_timeline.html -w /data/gscratch/web-services/Cleaning_Pipelines/workd07e4bbd5164ef48fc8bd5c492e8eef26da2e72f-9447-411c-b508-8ab36570b5faThese plots give an overview of the distribution of resource usage for each process.
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